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M = matchpairs(Price,costUnmatched) solves the linear assignment trouble for your rows and columns in the matrix Expense. Each individual row is assigned into a column in this type of way that the whole Price is minimized.

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Next, use matchpairs to match the rows and columns in the associated fee matrix. Specify the expense of unassignment as one. With such a low priced of unassignment relative to the entries in the cost matrix, it is probably going matchpairs will go away some points unmatched.

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